MLOC_48070 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains176.214200.742225.907165.42
LEAShoots from the seedlings (10 cm shoot stage)143.655125.766148.68102.73
INF1Young developing inflorescences (5mm)60.815652.977153.030138.4747
INF2Developing inflorescences (1-1.5 cm)39.930242.716443.612438.1626
ROORoots from the seedlings (10 cm shoot stage)133.307154.611136.075147.212
NODDeveloping tillers at six leaf stage, 3rd internode201.671170.736187.61487.395
CAR5Developing grain, bracts removed (5 DPA)96.467599.8811102.75379.0285
CAR15Developing grain, bracts removed (15 DPA)20.27520.742223.409637.762



CDS Structure of MLOC_48070






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48070.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353739NoneNoneNoneNone
MLOC_48070.3CUST_2741_PI427708080AvailableAvailablecontig_317177 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g36470.1 +3 0.0 592 289/314 (92%) 13107.m03746 protein vacuolar ATP synthase subunit H, putative, expressed
TAIR PP10 AT3G42050.1 +3 0.0 659 317/442 (72%) vacuolar ATP synthase subunit H family protein | chr3:14228846-14232228 REVERSE LENGTH=441