MLOC_48050 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.65835.451433.966834.9358
LEAShoots from the seedlings (10 cm shoot stage)35.966939.2119.593330.7954
INF1Young developing inflorescences (5mm)52.31654.865255.842551.5426
INF2Developing inflorescences (1-1.5 cm)57.150757.324740.658474.4795
ROORoots from the seedlings (10 cm shoot stage)19.765120.115128.890231.2773
NODDeveloping tillers at six leaf stage, 3rd internode26.569219.759822.045978.5951
CAR5Developing grain, bracts removed (5 DPA)25.525426.150729.358133.5669
CAR15Developing grain, bracts removed (15 DPA)25.672423.413326.414166.26



CDS Structure of MLOC_48050






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48050.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48050.1CUST_6778_PI427708083AvailableAvailablecontig_316769 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g09120.1 +3 2e-24 97 46/55 (84%) 13112.m00966 protein mRNA-capping enzyme, putative, expressed
TAIR PP10 AT3G09100.1 +3 2e-12 62 28/41 (68%) mRNA capping enzyme family protein | chr3:2790038-2792913 REVERSE LENGTH=471