MLOC_48013 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.3818712.50928.655356.25285
LEAShoots from the seedlings (10 cm shoot stage)5.049284.030073.230183.23164
INF1Young developing inflorescences (5mm)1.328160.7357721.284660.765843
INF2Developing inflorescences (1-1.5 cm)1.359421.323050.6900221.07338
ROORoots from the seedlings (10 cm shoot stage)0.1631460.37508800.54293
NODDeveloping tillers at six leaf stage, 3rd internode1.053371.088641.620883.27884
CAR5Developing grain, bracts removed (5 DPA)1.753982.055451.915651.48505
CAR15Developing grain, bracts removed (15 DPA)0.9753380.4350070.7936821.29416



CDS Structure of MLOC_48013






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48013.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48013.3CUST_12582_PI427708083AvailableAvailablecontig_316199 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g24530.1 -2 3e-32 126 61/74 (82%) 13109.m02328 protein ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
TAIR PP10 AT1G14030.1 -2 9e-22 95 46/76 (61%) Rubisco methyltransferase family protein | chr1:4805493-4807440 REVERSE LENGTH=482