MLOC_48004 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9015791.166461.066770.82072
LEAShoots from the seedlings (10 cm shoot stage)1.434441.297741.0730.899807
INF1Young developing inflorescences (5mm)2.707312.900782.799861.78553
INF2Developing inflorescences (1-1.5 cm)3.768362.707013.547942.85489
ROORoots from the seedlings (10 cm shoot stage)0.2019191.184721.793850.950476
NODDeveloping tillers at six leaf stage, 3rd internode0.3926331.049920.8062152.69534
CAR5Developing grain, bracts removed (5 DPA)2.513532.090711.952121.65968
CAR15Developing grain, bracts removed (15 DPA)3.095232.177962.287474.59711



CDS Structure of MLOC_48004






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_48004.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_48004.1NoneAvailableAvailablecontig_316014 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g14330.2 -3 2e-31 127 61/73 (84%) 13108.m01530 protein aldose 1-epimerase, putative, expressed
TAIR PP10 AT5G57330.1 -3 1e-26 112 51/73 (70%) Galactose mutarotase-like superfamily protein | chr5:23218392-23220664 FORWARD LENGTH=312