MLOC_47993 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1179021.001951.255170.881645
LEAShoots from the seedlings (10 cm shoot stage)1.135081.670561.201361.11436
INF1Young developing inflorescences (5mm)3.417921.952083.186222.50108
INF2Developing inflorescences (1-1.5 cm)2.282153.885683.691483.97536
ROORoots from the seedlings (10 cm shoot stage)00.22146800.710285
NODDeveloping tillers at six leaf stage, 3rd internode0.2315070.23950.3587550.79269
CAR5Developing grain, bracts removed (5 DPA)4.864812.964493.768894.07065
CAR15Developing grain, bracts removed (15 DPA)1.123741.521431.285823.35892



CDS Structure of MLOC_47993






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47993.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47993.1CUST_6770_PI427708083AvailableAvailablecontig_315876 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g08810.1 -3 3e-32 123 79/111 (71%) 13107.m00875 protein expressed protein
TAIR PP10 AT5G48520.1 -3 8e-18 82 53/111 (48%) unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | chr5:19661407-19666147 FORWARD LENGTH=617