MLOC_47961 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.029721.513952.018621.09525
LEAShoots from the seedlings (10 cm shoot stage)3.150221.682582.657561.76116
INF1Young developing inflorescences (5mm)2.837084.470495.387472.43404
INF2Developing inflorescences (1-1.5 cm)5.568735.200355.078284.52374
ROORoots from the seedlings (10 cm shoot stage)0.8038182.148241.301051.57325
NODDeveloping tillers at six leaf stage, 3rd internode0.2977850.4269740.8797861.26382
CAR5Developing grain, bracts removed (5 DPA)4.380055.94015.227333.72641
CAR15Developing grain, bracts removed (15 DPA)3.046252.442232.686754.70362



CDS Structure of MLOC_47961






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47961.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47961.2CUST_6768_PI427708083AvailableAvailablecontig_315309 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g61560.1 -3 4e-59 165 85/122 (70%) 13103.m06778 protein expressed protein
TAIR PP10 AT3G16810.1 -3 2e-27 84 44/117 (38%) | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723436-5727539 REVERSE LENGTH=641