MLOC_47898 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.977613.323716.316315.4317
LEAShoots from the seedlings (10 cm shoot stage)10.354711.87325.468526.94285
INF1Young developing inflorescences (5mm)7.2319112.838911.30378.19668
INF2Developing inflorescences (1-1.5 cm)11.69099.6253511.035510.6228
ROORoots from the seedlings (10 cm shoot stage)67.847132.116747.784740.1496
NODDeveloping tillers at six leaf stage, 3rd internode17.28511.661123.449535.1149
CAR5Developing grain, bracts removed (5 DPA)14.874313.747615.400112.7674
CAR15Developing grain, bracts removed (15 DPA)47.719352.193250.8141109.951



CDS Structure of MLOC_47898






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47898.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373819NoneNoneNoneNone
MLOC_47898.1CUST_2740_PI427708080AvailableAvailablecontig_314158 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g30600.1 -1 8e-32 118 53/69 (77%) 13102.m03340 protein conserved hypothetical protein
TAIR PP10 AT5G40970.1 -1 7e-28 106 46/69 (67%) Protein of unknown function (DUF 3339) | chr5:16414081-16414290 FORWARD LENGTH=69