MLOC_47746 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6533330.5761140.9113070.704517
LEAShoots from the seedlings (10 cm shoot stage)0.371070.3638291.414540.675354
INF1Young developing inflorescences (5mm)1.036840.8995571.016210.769123
INF2Developing inflorescences (1-1.5 cm)1.114152.097240.9681571.68383
ROORoots from the seedlings (10 cm shoot stage)0.1763270.7905710.3508480.878683
NODDeveloping tillers at six leaf stage, 3rd internode0.646451.171550.6374373.82177
CAR5Developing grain, bracts removed (5 DPA)0.6659340.5947311.286760.797516
CAR15Developing grain, bracts removed (15 DPA)1.557651.381410.9301593.47352



CDS Structure of MLOC_47746






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47746.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47746.1CUST_6736_PI427708083AvailableAvailablecontig_311471 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28770.1 +2 1e-87 269 132/157 (84%) 13109.m02839 protein patatin, putative, expressed
TAIR PP10 AT2G26560.1 +2 2e-63 206 99/166 (60%) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407