MLOC_477 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3077330.8315930.4338980.580435
LEAShoots from the seedlings (10 cm shoot stage)0.4209680.3362330.4659060.32945
INF1Young developing inflorescences (5mm)0.3268850.9011160.7717270.541604
INF2Developing inflorescences (1-1.5 cm)0.3141010.3572790.4898230.39085
ROORoots from the seedlings (10 cm shoot stage)0.7176170.3454960.3519010.455275
NODDeveloping tillers at six leaf stage, 3rd internode0.6266970.4718251.291561.81106
CAR5Developing grain, bracts removed (5 DPA)0.2487780.3362660.188640.24817
CAR15Developing grain, bracts removed (15 DPA)0.2024640.2215160.2206240.48578



CDS Structure of MLOC_477






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_477.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364752NoneNoneNoneNone
MLOC_477.3CUST_30_PI427708080AvailableAvailablecontig_103333 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43800.1 -3 0.0 1269 652/706 (92%) 13104.m04357 protein phenylalanine ammonia-lyase, putative, expressed
TAIR PP10 AT2G37040.1 -3 0.0 1042 525/692 (76%) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725