MLOC_47606 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)00.1785800.153558
INF1Young developing inflorescences (5mm)0.175031000.166161
INF2Developing inflorescences (1-1.5 cm)0000.0462155
ROORoots from the seedlings (10 cm shoot stage)00.10593300.552218
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)432.513498.756421.859469.933
CAR15Developing grain, bracts removed (15 DPA)1.692341.437022.115224.20565



CDS Structure of MLOC_47606






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47606.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47606.1CUST_12479_PI427708080AvailableAvailablecontig_308898 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15710.1 +3 1e-48 158 79/127 (62%) 13102.m01752 protein plastocyanin-like domain containing protein, putative
TAIR PP10 AT2G02850.1 +3 2e-31 113 57/129 (44%) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129