MLOC_47562 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.02323362.937021.761430.62748
LEAShoots from the seedlings (10 cm shoot stage)1.523713.548196.270041.58356
INF1Young developing inflorescences (5mm)0.2644553.624422.026730.625137
INF2Developing inflorescences (1-1.5 cm)2.351132.257342.011741.46585
ROORoots from the seedlings (10 cm shoot stage)0.5526831.281961.673220.500513
NODDeveloping tillers at six leaf stage, 3rd internode1.419671.349731.959442.69391
CAR5Developing grain, bracts removed (5 DPA)1.129541.880210.2123940.595389
CAR15Developing grain, bracts removed (15 DPA)0.9114261.41032.842951.6322



CDS Structure of MLOC_47562






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47562.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47562.1CUST_6710_PI427708083AvailableAvailablecontig_308196 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g42750.1 +1 7e-14 58 26/30 (87%) 13103.m04594 protein roothairless 1, putative, expressed
TAIR PP10 AT1G47550.2 +1 4e-12 53 22/30 (73%) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=888