MLOC_47532 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)000.02759160.0242723
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)89.347191.318276.284588.1444
CAR15Developing grain, bracts removed (15 DPA)1.385091.212632.782064.3332



CDS Structure of MLOC_47532






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47532.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374841NoneNoneNoneNone
MLOC_47532.2CUST_2738_PI427708080AvailableAvailablecontig_307649 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g08330.1 -1 4e-144 427 264/452 (58%) 13101.m00870 protein aspartic proteinase nepenthesin-1 precursor, putative
TAIR PP10 AT1G64830.1 -1 6e-59 204 151/430 (35%) Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431