- Predicted Gene MLOC_47482
MLOC_47482 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 14.2856 | 12.7018 | 11.3192 | 13.1601 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 21.1559 | 36.0536 | 25.0599 | 22.3068 |
INF1 | Young developing inflorescences (5mm) | 12.1829 | 11.5252 | 11.637 | 10.5056 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.29345 | 9.9314 | 10.4814 | 11.0112 |
ROO | Roots from the seedlings (10 cm shoot stage) | 8.88226 | 5.9007 | 7.97949 | 7.52583 |
NOD | Developing tillers at six leaf stage, 3rd internode | 7.25679 | 7.21273 | 6.84539 | 20.8874 |
CAR5 | Developing grain, bracts removed (5 DPA) | 26.0873 | 33.9989 | 28.7296 | 31.1302 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.46707 | 3.60219 | 3.08911 | 8.60343 |
CDS Structure of MLOC_47482
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_47482.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g36030.1 |
-3 |
5e-127 |
387 |
235/266 (88%) |
13109.m03539 protein 4-hydroxy-2-oxovalerate aldolase, putative, expressed |
TAIR PP10 |
AT4G10750.1 |
-3 |
4e-90 |
290 |
171/259 (66%) |
Phosphoenolpyruvate carboxylase family protein | chr4:6618724-6619800 FORWARD LENGTH=358 |