MLOC_47482 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.285612.701811.319213.1601
LEAShoots from the seedlings (10 cm shoot stage)21.155936.053625.059922.3068
INF1Young developing inflorescences (5mm)12.182911.525211.63710.5056
INF2Developing inflorescences (1-1.5 cm)8.293459.931410.481411.0112
ROORoots from the seedlings (10 cm shoot stage)8.882265.90077.979497.52583
NODDeveloping tillers at six leaf stage, 3rd internode7.256797.212736.8453920.8874
CAR5Developing grain, bracts removed (5 DPA)26.087333.998928.729631.1302
CAR15Developing grain, bracts removed (15 DPA)3.467073.602193.089118.60343



CDS Structure of MLOC_47482






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47482.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367519NoneNoneNoneNone
MLOC_47482.1CUST_2737_PI427708080AvailableAvailablecontig_306818 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g36030.1 -3 5e-127 387 235/266 (88%) 13109.m03539 protein 4-hydroxy-2-oxovalerate aldolase, putative, expressed
TAIR PP10 AT4G10750.1 -3 4e-90 290 171/259 (66%) Phosphoenolpyruvate carboxylase family protein | chr4:6618724-6619800 FORWARD LENGTH=358