MLOC_47469 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.341954.621843.052938.9378
LEAShoots from the seedlings (10 cm shoot stage)47.147938.972437.728434.8365
INF1Young developing inflorescences (5mm)69.505868.659964.910655.4411
INF2Developing inflorescences (1-1.5 cm)95.26787.338474.016993.505
ROORoots from the seedlings (10 cm shoot stage)20.852236.752726.449938.7241
NODDeveloping tillers at six leaf stage, 3rd internode17.45828.363916.167884.9792
CAR5Developing grain, bracts removed (5 DPA)65.32655.216957.217955.8855
CAR15Developing grain, bracts removed (15 DPA)45.389242.298742.134797.8554



CDS Structure of MLOC_47469






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47469.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47469.1CUST_17696_PI427708080AvailableAvailablecontig_306531 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05500.2 -1 0.0 1870 1066/1473 (72%) 13101.m00525 protein zinc finger protein, putative, expressed
TAIR PP10 AT5G02310.1 -1 0.0 947 626/1483 (42%) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006