MLOC_47445 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.268948.016387.984817.27365
LEAShoots from the seedlings (10 cm shoot stage)12.82110.245111.92259.39451
INF1Young developing inflorescences (5mm)10.424511.977518.380910.3081
INF2Developing inflorescences (1-1.5 cm)19.402726.215925.641324.4286
ROORoots from the seedlings (10 cm shoot stage)8.378687.510679.124928.88452
NODDeveloping tillers at six leaf stage, 3rd internode13.793816.329631.029660.3085
CAR5Developing grain, bracts removed (5 DPA)13.481115.657413.379712.9065
CAR15Developing grain, bracts removed (15 DPA)6.081786.967625.3764813.9756



CDS Structure of MLOC_47445






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47445.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47445.2CUST_17694_PI427708080AvailableAvailablecontig_306116 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g45180.1 -3 8e-74 241 113/153 (74%) 13103.m04867 protein expressed protein
TAIR PP10 AT1G28760.1 -3 1e-26 110 51/137 (37%) Uncharacterized conserved protein (DUF2215) | chr1:10103158-10104588 FORWARD LENGTH=476