MLOC_47380 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.464164.032234.751815.37907
LEAShoots from the seedlings (10 cm shoot stage)6.693174.861924.359425.03289
INF1Young developing inflorescences (5mm)17.747323.789125.492527.9196
INF2Developing inflorescences (1-1.5 cm)20.612224.509321.520534.1605
ROORoots from the seedlings (10 cm shoot stage)3.170334.845525.022928.30148
NODDeveloping tillers at six leaf stage, 3rd internode2.453322.984432.6325410.8362
CAR5Developing grain, bracts removed (5 DPA)14.07414.010912.803218.3163
CAR15Developing grain, bracts removed (15 DPA)4.667413.732394.1532112.5495



CDS Structure of MLOC_47380






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47380.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47380.1CUST_12567_PI427708083AvailableAvailablecontig_305003 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04310.2 +3 3e-43 154 112/185 (61%) 13103.m00439 protein BHLH transcription factor, putative, expressed
TAIR PP10 AT5G65640.1 +3 2e-46 161 105/186 (56%) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351