MLOC_47261 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.212211.469220.545921.5177
LEAShoots from the seedlings (10 cm shoot stage)9.306275.76137.492437.03929
INF1Young developing inflorescences (5mm)31.830931.299537.159534.5691
INF2Developing inflorescences (1-1.5 cm)25.016630.911929.487741.0951
ROORoots from the seedlings (10 cm shoot stage)17.825411.227516.431218.2381
NODDeveloping tillers at six leaf stage, 3rd internode0.9735462.16647.097710.7234
CAR5Developing grain, bracts removed (5 DPA)35.362433.295541.984346.5944
CAR15Developing grain, bracts removed (15 DPA)23.619619.508416.082957.3499



CDS Structure of MLOC_47261






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47261.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47261.1CUST_6653_PI427708083AvailableAvailablecontig_303112 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08440.2 +1 1e-31 113 56/65 (86%) 13103.m00971 protein ribosomal protein S2, putative, expressed
TAIR PP10 AT1G72370.2 +1 1e-32 115 57/65 (88%) | Symbols: P40, AP40, RP40, RPSAA | 40s ribosomal protein SA | chr1:27243148-27244842 REVERSE LENGTH=294