MLOC_47233 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.660568.204588.898559.83649
LEAShoots from the seedlings (10 cm shoot stage)2.9736102.251583.03036
INF1Young developing inflorescences (5mm)7.984555.791464.57226.74681
INF2Developing inflorescences (1-1.5 cm)5.489655.5653610.50328.90396
ROORoots from the seedlings (10 cm shoot stage)3.61723.01216.149095.58173
NODDeveloping tillers at six leaf stage, 3rd internode8.549337.7369710.63530.7285
CAR5Developing grain, bracts removed (5 DPA)3.922732.21855.046024.31806
CAR15Developing grain, bracts removed (15 DPA)0.6371530.3592020.4780021.43701



CDS Structure of MLOC_47233






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47233.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47233.1CUST_6647_PI427708083AvailableAvailablecontig_302799 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT3G20660.1 +2 5e-15 69 31/51 (61%) | Symbols: AtOCT4, 4-Oct | organic cation/carnitine transporter4 | chr3:7225271-7228510 REVERSE LENGTH=526