MLOC_47217 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.668571.83452.052442.39858
LEAShoots from the seedlings (10 cm shoot stage)1.759920.7339120.781310.93006
INF1Young developing inflorescences (5mm)2.02292.767915.74053.14079
INF2Developing inflorescences (1-1.5 cm)1.373530.738042.738641.65849
ROORoots from the seedlings (10 cm shoot stage)2.355791.458732.514731.94674
NODDeveloping tillers at six leaf stage, 3rd internode2.136373.114471.866956.54215
CAR5Developing grain, bracts removed (5 DPA)11.30378.9736210.593110.3072
CAR15Developing grain, bracts removed (15 DPA)1.398721.112581.081413.03397



CDS Structure of MLOC_47217






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47217.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47217.1CUST_6644_PI427708083AvailableAvailablecontig_302540 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03750.1 -1 1e-65 204 117/151 (77%) 13101.m00326 protein expressed protein
TAIR PP10 AT1G67080.1 -1 3e-52 168 78/121 (64%) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220