MLOC_47200 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.118461.991623.233982.13525
LEAShoots from the seedlings (10 cm shoot stage)5.109425.228578.029134.96235
INF1Young developing inflorescences (5mm)1.078971.910141.464681.11432
INF2Developing inflorescences (1-1.5 cm)0.980520.7299950.802940.853831
ROORoots from the seedlings (10 cm shoot stage)9.2695912.069711.12312.5251
NODDeveloping tillers at six leaf stage, 3rd internode7.741488.2008719.546829.6627
CAR5Developing grain, bracts removed (5 DPA)1.34492.887542.58531.93463
CAR15Developing grain, bracts removed (15 DPA)2.443763.07443.470345.67428



CDS Structure of MLOC_47200






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47200.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47200.2CUST_6642_PI427708083AvailableAvailablecontig_302181 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g47870.2 -2 2e-80 261 129/151 (85%) 13104.m04863 protein PINHEAD, putative, expressed
TAIR PP10 AT1G48410.1 -2 1e-77 252 122/151 (81%) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048