MLOC_47169 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5415141.914081.799781.27868
LEAShoots from the seedlings (10 cm shoot stage)0.8643460.4448731.849350.83188
INF1Young developing inflorescences (5mm)2.343781.885112.938561.76608
INF2Developing inflorescences (1-1.5 cm)2.590392.902870.984562.52424
ROORoots from the seedlings (10 cm shoot stage)1.318572.534680.8037232.30198
NODDeveloping tillers at six leaf stage, 3rd internode0.4198660.6079720.9276162.08023
CAR5Developing grain, bracts removed (5 DPA)1.399911.667820.7650881.16545
CAR15Developing grain, bracts removed (15 DPA)0.7465570.52279201.82917



CDS Structure of MLOC_47169






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47169.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47169.1CUST_6637_PI427708083AvailableAvailablecontig_301762 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03760.2 +2 4e-39 139 68/102 (67%) 13101.m00328 protein expressed protein
TAIR PP10 AT1G70770.2 +2 2e-29 112 55/101 (54%) Protein of unknown function DUF2359, transmembrane | chr1:26688622-26691185 REVERSE LENGTH=610