MLOC_47168 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains76.371556.922722.79960.3292
LEAShoots from the seedlings (10 cm shoot stage)16.02489.244319.3195811.1825
INF1Young developing inflorescences (5mm)121.735109.194117.518111.654
INF2Developing inflorescences (1-1.5 cm)76.084590.518696.9742106.862
ROORoots from the seedlings (10 cm shoot stage)27.316449.34866.38363.1038
NODDeveloping tillers at six leaf stage, 3rd internode6.254035.7387416.140125.2923
CAR5Developing grain, bracts removed (5 DPA)89.502896.3355121.376111.829
CAR15Developing grain, bracts removed (15 DPA)54.987351.669250.6817134.781



CDS Structure of MLOC_47168






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47168.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47168.2CUST_6636_PI427708083AvailableAvailablecontig_301725 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42450.1 -1 8e-49 120 58/67 (87%) 13107.m04437 protein ribosomal protein S2, putative, expressed
TAIR PP10 AT3G04770.1 -1 9e-45 120 57/67 (85%) | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309465-1310846 REVERSE LENGTH=332