MLOC_47120 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.365232.636882.033213.14758
LEAShoots from the seedlings (10 cm shoot stage)4.442293.241443.456873.72168
INF1Young developing inflorescences (5mm)1.762032.200166.445453.05508
INF2Developing inflorescences (1-1.5 cm)3.893585.303063.041285.25796
ROORoots from the seedlings (10 cm shoot stage)4.051182.762222.988024.34744
NODDeveloping tillers at six leaf stage, 3rd internode2.045564.569464.7775618.7582
CAR5Developing grain, bracts removed (5 DPA)1.871633.164764.849083.53186
CAR15Developing grain, bracts removed (15 DPA)1.836981.284341.232243.92873



CDS Structure of MLOC_47120






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47120.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47120.1CUST_6633_PI427708083AvailableAvailablecontig_300959 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g06820.1 +2 2e-36 130 71/117 (61%) 13107.m00658 protein serine/threonine-protein kinase RIO-like, putative, expressed
TAIR PP10 AT5G37350.1 +2 6e-34 122 67/115 (58%) Serine/threonine-protein kinase Rio1 | chr5:14793037-14795828 FORWARD LENGTH=531