MLOC_47119 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.474982.184611.830141.74782
LEAShoots from the seedlings (10 cm shoot stage)6.620156.784917.609275.50742
INF1Young developing inflorescences (5mm)5.276835.729066.237394.35255
INF2Developing inflorescences (1-1.5 cm)6.022147.154186.047136.48998
ROORoots from the seedlings (10 cm shoot stage)1.137511.276561.711361.41775
NODDeveloping tillers at six leaf stage, 3rd internode4.711076.68458.6150320.211
CAR5Developing grain, bracts removed (5 DPA)4.735985.317046.070364.79557
CAR15Developing grain, bracts removed (15 DPA)4.635274.802154.570389.65625



CDS Structure of MLOC_47119






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47119.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47119.1CUST_12559_PI427708083AvailableAvailablecontig_300914 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g20470.1 -1 5e-97 301 146/178 (82%) 13110.m01676 protein MATE efflux family protein, putative, expressed
TAIR PP10 AT5G52450.1 -1 3e-67 223 102/176 (58%) MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486