MLOC_47072 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.643630.513436.982531.2622
LEAShoots from the seedlings (10 cm shoot stage)12.01699.1683712.91218.62959
INF1Young developing inflorescences (5mm)4.283212.448552.957082.38252
INF2Developing inflorescences (1-1.5 cm)0.6878380.9164562.094990.997449
ROORoots from the seedlings (10 cm shoot stage)33.537722.314423.237225.3163
NODDeveloping tillers at six leaf stage, 3rd internode59.683845.569736.4403133.202
CAR5Developing grain, bracts removed (5 DPA)2.906652.234072.074361.98499
CAR15Developing grain, bracts removed (15 DPA)0.2626220.2678860.1538330.495652



CDS Structure of MLOC_47072






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47072.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47072.1CUST_6625_PI427708083AvailableAvailablecontig_300213 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12150.1 -2 4e-135 396 201/233 (86%) 13106.m01319 protein shikimate kinase, putative, expressed
TAIR PP10 AT2G21940.5 -2 9e-81 256 126/216 (58%) | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=303