MLOC_47055 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.828868.954098.151818.87966
LEAShoots from the seedlings (10 cm shoot stage)8.531444.943644.826655.46889
INF1Young developing inflorescences (5mm)23.334122.237524.131919.6912
INF2Developing inflorescences (1-1.5 cm)27.998428.972827.92631.7101
ROORoots from the seedlings (10 cm shoot stage)4.517488.855897.2851710.3572
NODDeveloping tillers at six leaf stage, 3rd internode6.745186.423877.4299523.0009
CAR5Developing grain, bracts removed (5 DPA)14.390615.105313.42414.5332
CAR15Developing grain, bracts removed (15 DPA)4.699215.072175.6019111.7886



CDS Structure of MLOC_47055






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47055.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47055.2CUST_12441_PI427708080AvailableAvailablecontig_300035 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51640.1 +1 1e-118 355 197/308 (64%) 13102.m05876 protein expressed protein
TAIR PP10 AT5G65120.1 +1 3e-14 74 67/225 (30%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26013274-26014504 FORWARD LENGTH=317