MLOC_47007 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5543560.1233620.3921291.29866
LEAShoots from the seedlings (10 cm shoot stage)0.9212022.513840.9339542.74066
INF1Young developing inflorescences (5mm)1.028511.124850.9396371.53785
INF2Developing inflorescences (1-1.5 cm)0.6980330.4586340.6768861.61201
ROORoots from the seedlings (10 cm shoot stage)0.4686490.393260.4387751.59976
NODDeveloping tillers at six leaf stage, 3rd internode0.5665390.4100330.541476.74678
CAR5Developing grain, bracts removed (5 DPA)0.3642630.2189190.8294941.26188
CAR15Developing grain, bracts removed (15 DPA)0.1323790.4072350.3969441.08593



CDS Structure of MLOC_47007






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_47007.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_47007.1CUST_12553_PI427708083AvailableAvailablecontig_299151 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g61410.1 -3 5e-29 77 38/44 (86%) 13101.m06536 protein NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
TAIR PP10 AT1G07180.1 -2 3e-24 66 30/43 (70%) | Symbols: ATNDI1, NDA1 | alternative NAD(P)H dehydrogenase 1 | chr1:2204414-2206773 FORWARD LENGTH=510