MLOC_470 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.31940.8734470.5455822.00547
LEAShoots from the seedlings (10 cm shoot stage)00.78821300.772679
INF1Young developing inflorescences (5mm)1.275610.3698820.4549680.955897
INF2Developing inflorescences (1-1.5 cm)00.6842300.573759
ROORoots from the seedlings (10 cm shoot stage)1.81136001.30693
NODDeveloping tillers at six leaf stage, 3rd internode0.777240.6114660.2704822.8242
CAR5Developing grain, bracts removed (5 DPA)22.383212.39822.17014.62396
CAR15Developing grain, bracts removed (15 DPA)1.225160.81904900.474877



CDS Structure of MLOC_470






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_470.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_470.1NoneAvailableAvailablecontig_103289 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g26850.3 -1 3e-12 63 29/33 (88%) 13111.m02571 protein erythronate-4-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT4G13940.4 -1 2e-26 100 63/73 (86%) | Symbols: HOG1, SAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056763 FORWARD LENGTH=325