MLOC_46985 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.783813.980514.94578.66721
LEAShoots from the seedlings (10 cm shoot stage)20.857117.176316.36929.33815
INF1Young developing inflorescences (5mm)21.2726.327429.258111.2057
INF2Developing inflorescences (1-1.5 cm)25.008426.890823.91316.9726
ROORoots from the seedlings (10 cm shoot stage)21.097815.830722.115311.5573
NODDeveloping tillers at six leaf stage, 3rd internode13.933112.517818.461826.9894
CAR5Developing grain, bracts removed (5 DPA)18.567216.205119.32529.58385
CAR15Developing grain, bracts removed (15 DPA)4.597815.507857.315116.58242



CDS Structure of MLOC_46985






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46985.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46985.1NoneAvailableAvailablecontig_298833 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g08960.2 +3 7e-34 126 59/60 (98%) 13105.m00994 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT2G02760.1 +3 8e-33 123 57/60 (95%) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152