MLOC_46952 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.99916.20936.6384210.5412
LEAShoots from the seedlings (10 cm shoot stage)8.556787.160283.857357.40872
INF1Young developing inflorescences (5mm)10.2758.1360118.731711.4209
INF2Developing inflorescences (1-1.5 cm)14.405515.68711.63519.4936
ROORoots from the seedlings (10 cm shoot stage)3.863426.8737416.31749.4947
NODDeveloping tillers at six leaf stage, 3rd internode6.0829411.40249.9083643.5768
CAR5Developing grain, bracts removed (5 DPA)10.34496.688285.959199.91756
CAR15Developing grain, bracts removed (15 DPA)2.022111.063830.7551015.25631



CDS Structure of MLOC_46952






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46952.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46952.1CUST_6611_PI427708083AvailableAvailablecontig_298340 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60530.3 +2 2e-26 99 48/54 (89%) 13103.m06642 protein ras-related protein, putative, expressed
TAIR PP10 AT5G59840.1 +2 3e-26 98 47/54 (87%) Ras-related small GTP-binding family protein | chr5:24107450-24109049 REVERSE LENGTH=216