MLOC_4671 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.855186.961336.774466.16646
LEAShoots from the seedlings (10 cm shoot stage)7.994217.598066.189566.36751
INF1Young developing inflorescences (5mm)13.917116.093415.677511.9355
INF2Developing inflorescences (1-1.5 cm)25.894721.931620.617424.1794
ROORoots from the seedlings (10 cm shoot stage)2.481414.453913.536135.22423
NODDeveloping tillers at six leaf stage, 3rd internode4.397554.636624.4834616.5064
CAR5Developing grain, bracts removed (5 DPA)9.219029.6884110.12229.10809
CAR15Developing grain, bracts removed (15 DPA)5.793275.541875.4903411.8975



CDS Structure of MLOC_4671






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4671.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4671.1CUST_12409_PI427708080AvailableAvailablecontig_135384 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g43790.1 -2 0.0 614 343/457 (75%) 13106.m04589 protein transcription initiation factor TFIID subunit 1, putative, expressed
TAIR PP10 AT1G32750.1 -2 5e-53 202 186/547 (34%) | Symbols: HAF01, HAF1, HAC13, GTD1, TAF1 | HAC13 protein (HAC13) | chr1:11846385-11856261 REVERSE LENGTH=1919