MLOC_46683 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.7673814.356214.81189.26964
LEAShoots from the seedlings (10 cm shoot stage)16.65548.505635.843818.07374
INF1Young developing inflorescences (5mm)16.359718.982817.63511.7501
INF2Developing inflorescences (1-1.5 cm)11.831419.809616.366714.452
ROORoots from the seedlings (10 cm shoot stage)3.1603110.53545.088938.56935
NODDeveloping tillers at six leaf stage, 3rd internode6.820228.741095.0235722.4841
CAR5Developing grain, bracts removed (5 DPA)14.278311.310912.98249.87969
CAR15Developing grain, bracts removed (15 DPA)4.454152.490563.787766.65422



CDS Structure of MLOC_46683






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46683.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46683.2CUST_12542_PI427708083AvailableAvailablecontig_294196 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g47930.1 -2 2e-42 157 76/78 (97%) 13103.m05168 protein expressed protein
TAIR PP10 AT5G06970.1 -2 3e-23 100 46/78 (59%) Protein of unknown function (DUF810) | chr5:2158431-2166004 REVERSE LENGTH=1101