MLOC_46656 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.605581.604482.206511.58887
LEAShoots from the seedlings (10 cm shoot stage)4.311126.857263.452163.32452
INF1Young developing inflorescences (5mm)6.149577.630737.623024.71571
INF2Developing inflorescences (1-1.5 cm)13.70097.0501210.507810.5217
ROORoots from the seedlings (10 cm shoot stage)1.768261.451062.463551.79559
NODDeveloping tillers at six leaf stage, 3rd internode1.30773.154024.273759.23016
CAR5Developing grain, bracts removed (5 DPA)2.019223.188843.023622.12121
CAR15Developing grain, bracts removed (15 DPA)3.280942.311454.47835.86471



CDS Structure of MLOC_46656






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46656.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46656.1CUST_12541_PI427708083AvailableAvailablecontig_293767 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46160.1 +1 7e-29 99 49/62 (79%) 13107.m04859 protein MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
TAIR PP10 AT3G06190.1 +1 3e-19 71 35/83 (42%) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=406