MLOC_46595 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains113.022122.372129.491114.162
LEAShoots from the seedlings (10 cm shoot stage)111.31659.332256.27164.0985
INF1Young developing inflorescences (5mm)105.771102.808142.57686.5192
INF2Developing inflorescences (1-1.5 cm)105.858134.11592.5273115.022
ROORoots from the seedlings (10 cm shoot stage)48.779880.820568.357986.6103
NODDeveloping tillers at six leaf stage, 3rd internode105.463121.15650.5444351.285
CAR5Developing grain, bracts removed (5 DPA)89.209886.4579114.47783.5926
CAR15Developing grain, bracts removed (15 DPA)24.943416.34422.951144.3602



CDS Structure of MLOC_46595






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46595.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46595.1CUST_6566_PI427708083AvailableAvailablecontig_292781 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g37750.1 +1 6e-53 181 89/97 (92%) 13107.m03888 protein ATMIN7, putative, expressed
TAIR PP10 AT3G43300.2 +1 1e-36 134 65/89 (73%) | Symbols: ATMIN7 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1727