MLOC_46590 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains54.74567.131279.164752.3951
LEAShoots from the seedlings (10 cm shoot stage)66.560753.492537.292638.4346
INF1Young developing inflorescences (5mm)89.918995.634595.750461.2273
INF2Developing inflorescences (1-1.5 cm)85.063888.91264.549873.7075
ROORoots from the seedlings (10 cm shoot stage)35.093951.649741.097345.5934
NODDeveloping tillers at six leaf stage, 3rd internode49.056738.072130.023399.5305
CAR5Developing grain, bracts removed (5 DPA)59.601157.324567.383445.5338
CAR15Developing grain, bracts removed (15 DPA)35.83231.716928.764760.4356



CDS Structure of MLOC_46590






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46590.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46590.1CUST_12535_PI427708083AvailableAvailablecontig_292697 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g36930.1 +3 9e-19 83 50/63 (79%) 13101.m03745 protein ubiquitin carboxyl-terminal hydrolase 6, putative, expressed
TAIR PP10 AT3G21280.1 +3 3e-17 78 45/59 (76%) | Symbols: UBP7 | ubiquitin-specific protease 7 | chr3:7478166-7482037 REVERSE LENGTH=532