MLOC_46575 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3156060.5446660.4337620.8513
LEAShoots from the seedlings (10 cm shoot stage)1.382470.172220.4116870.907142
INF1Young developing inflorescences (5mm)1.813790.6576471.668931.40075
INF2Developing inflorescences (1-1.5 cm)1.412551.822311.566651.98171
ROORoots from the seedlings (10 cm shoot stage)0.8780430.8331621.299041.54609
NODDeveloping tillers at six leaf stage, 3rd internode0.7652551.856232.963639.42482
CAR5Developing grain, bracts removed (5 DPA)0.7578791.765481.484771.57934
CAR15Developing grain, bracts removed (15 DPA)0.405280.4125620.4507761.42685



CDS Structure of MLOC_46575






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46575.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46575.1CUST_6564_PI427708083AvailableAvailablecontig_292481 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT1G43890.3 -2 3e-11 61 30/34 (88%) | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1, RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395 FORWARD LENGTH=212