MLOC_46394 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)000.06518580.0603164
CAR15Developing grain, bracts removed (15 DPA)13.02212.205212.060830.3118



CDS Structure of MLOC_46394






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46394.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46394.1CUST_12391_PI427708080AvailableAvailablecontig_289557 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g33690.1 -2 1e-79 244 125/199 (63%) 13106.m03477 protein CAPIP1, putative, expressed
TAIR PP10 AT5G53160.2 -2 1e-66 209 100/163 (61%) | Symbols: RCAR3, PYL8 | regulatory components of ABA receptor 3 | chr5:21561026-21561953 FORWARD LENGTH=188