MLOC_46351 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.451462.211752.270291.32766
LEAShoots from the seedlings (10 cm shoot stage)3.439873.78952.130681.8895
INF1Young developing inflorescences (5mm)1.844581.399445.344891.41077
INF2Developing inflorescences (1-1.5 cm)2.954933.516221.659442.5098
ROORoots from the seedlings (10 cm shoot stage)4.780862.18751.405562.36445
NODDeveloping tillers at six leaf stage, 3rd internode2.45494.300688.1922811.4697
CAR5Developing grain, bracts removed (5 DPA)1.698132.285222.364061.54434
CAR15Developing grain, bracts removed (15 DPA)0.9928850.8087620.2940021.40234



CDS Structure of MLOC_46351






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46351.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46351.1CUST_12526_PI427708083AvailableAvailablecontig_289010 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38300.2 +2 5e-20 86 42/52 (81%) 13102.m04213 protein SNF7 domain containing protein, putative, expressed
TAIR PP10 AT5G09260.1 +2 5e-19 82 39/52 (75%) | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216