MLOC_4631 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.918855.19365.0165.00598
LEAShoots from the seedlings (10 cm shoot stage)4.626823.350672.145822.9353
INF1Young developing inflorescences (5mm)6.858336.879327.325165.68007
INF2Developing inflorescences (1-1.5 cm)3.881964.945435.33024.9129
ROORoots from the seedlings (10 cm shoot stage)3.635577.6426.597958.34591
NODDeveloping tillers at six leaf stage, 3rd internode0.4409370.6369471.366582.64198
CAR5Developing grain, bracts removed (5 DPA)13.706113.859213.7913.0358
CAR15Developing grain, bracts removed (15 DPA)4.50614.147043.615529.24723



CDS Structure of MLOC_4631






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4631.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369872NoneNoneNoneNone
MLOC_4631.1CUST_274_PI427708080AvailableAvailablecontig_135340 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51100.1 +3 0.0 603 340/385 (88%) 13104.m05197 protein COBW domain containing protein, putative, expressed
TAIR PP10 AT1G80480.1 +3 9e-127 383 216/359 (60%) | Symbols: PTAC17 | plastid transcriptionally active 17 | chr1:30258272-30260570 REVERSE LENGTH=444