MLOC_46227 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.213817.130715.171513.3805
LEAShoots from the seedlings (10 cm shoot stage)10.37426.6869110.21058.15343
INF1Young developing inflorescences (5mm)8.725038.893538.815356.7204
INF2Developing inflorescences (1-1.5 cm)9.294386.568135.309937.58138
ROORoots from the seedlings (10 cm shoot stage)13.65698.6902413.840312.8201
NODDeveloping tillers at six leaf stage, 3rd internode11.549814.46928.7000642.397
CAR5Developing grain, bracts removed (5 DPA)6.496545.56285.030464.77415
CAR15Developing grain, bracts removed (15 DPA)3.407452.37292.759446.02221



CDS Structure of MLOC_46227






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46227.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46227.3CUST_12522_PI427708083AvailableAvailablecontig_287208 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g62720.3 -1 7e-31 113 56/59 (95%) 13103.m12898 protein exosome complex exonuclease, putative, expressed
TAIR PP10 AT4G27490.1 -1 2e-22 92 44/60 (73%) 3-5-exoribonuclease family protein | chr4:13739961-13741647 FORWARD LENGTH=256