MLOC_46197 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.2114780.6513780.302793
LEAShoots from the seedlings (10 cm shoot stage)1.543250.3978080.6550570.677813
INF1Young developing inflorescences (5mm)0.2106470.8331721.309650.439261
INF2Developing inflorescences (1-1.5 cm)0.6227840.5822180.4108460.516072
ROORoots from the seedlings (10 cm shoot stage)1.207491.119481.453391.04427
NODDeveloping tillers at six leaf stage, 3rd internode0.9613861.468212.005143.71597
CAR5Developing grain, bracts removed (5 DPA)0.5848820.5295250.2227440.358939
CAR15Developing grain, bracts removed (15 DPA)0.6641280.2293270.3273740.903769



CDS Structure of MLOC_46197






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46197.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46197.1CUST_12521_PI427708083AvailableAvailablecontig_286785 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g05280.1 -2 6e-15 71 30/41 (73%) 13103.m00555 protein ras-related protein, putative, expressed
TAIR PP10 AT1G43890.3 -2 1e-19 83 39/41 (95%) | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1, RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395 FORWARD LENGTH=212