MLOC_46170 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.533256.234113.941274.92895
LEAShoots from the seedlings (10 cm shoot stage)5.77014.289015.327564.26458
INF1Young developing inflorescences (5mm)10.13214.087712.89419.34384
INF2Developing inflorescences (1-1.5 cm)13.898217.037312.672915.1475
ROORoots from the seedlings (10 cm shoot stage)3.83394.069895.283324.56879
NODDeveloping tillers at six leaf stage, 3rd internode7.438957.4606812.321226.2778
CAR5Developing grain, bracts removed (5 DPA)6.760225.042447.434525.47078
CAR15Developing grain, bracts removed (15 DPA)2.988822.700964.196526.48835



CDS Structure of MLOC_46170






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46170.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46170.1CUST_6505_PI427708083AvailableAvailablecontig_286411 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g48700.1 +2 6e-38 134 84/113 (74%) 13101.m05054 protein transcription factor Dp, putative, expressed
TAIR PP10 AT5G03415.2 +2 2e-17 78 51/117 (44%) | Symbols: DPB | Transcription factor DP | chr5:842842-845200 FORWARD LENGTH=379