MLOC_46083 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.611529.830624.461224.9459
LEAShoots from the seedlings (10 cm shoot stage)26.161418.902217.299318.8191
INF1Young developing inflorescences (5mm)69.417666.151258.321356.146
INF2Developing inflorescences (1-1.5 cm)85.155478.470364.835586.1752
ROORoots from the seedlings (10 cm shoot stage)11.671527.92719.264732.0467
NODDeveloping tillers at six leaf stage, 3rd internode7.0985710.241610.759436.7123
CAR5Developing grain, bracts removed (5 DPA)44.322337.000941.165739.9396
CAR15Developing grain, bracts removed (15 DPA)26.068822.508719.666653.8899



CDS Structure of MLOC_46083






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_46083.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_46083.1CUST_12364_PI427708080AvailableAvailablecontig_285266 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01740.1 -2 0.0 3786 1989/2179 (91%) 13102.m00099 protein U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
TAIR PP10 AT1G20960.2 -2 0.0 3058 1613/2182 (74%) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171