MLOC_45978 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.7839910.407810.813217.0544
LEAShoots from the seedlings (10 cm shoot stage)5.829722.79874.128166.42679
INF1Young developing inflorescences (5mm)9.1087.0303710.99212.1362
INF2Developing inflorescences (1-1.5 cm)7.800146.162874.8785611.6223
ROORoots from the seedlings (10 cm shoot stage)7.381336.161895.2515112.3057
NODDeveloping tillers at six leaf stage, 3rd internode4.192634.749283.4834821.9556
CAR5Developing grain, bracts removed (5 DPA)8.092618.548899.3728518.0808
CAR15Developing grain, bracts removed (15 DPA)1.133940.5280662.242686.59589



CDS Structure of MLOC_45978






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45978.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45978.1CUST_6474_PI427708083AvailableAvailablecontig_283829 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g34480.3 -3 7e-56 180 91/125 (73%) 13101.m03471 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT5G19440.1 -3 5e-44 151 75/106 (71%) NAD(P)-binding Rossmann-fold superfamily protein | chr5:6556493-6558123 FORWARD LENGTH=326