MLOC_45739 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.690756.639828.00386.25861
LEAShoots from the seedlings (10 cm shoot stage)12.19635.748946.99816.9778
INF1Young developing inflorescences (5mm)18.589521.148927.570417.9958
INF2Developing inflorescences (1-1.5 cm)28.270531.017931.012832.0759
ROORoots from the seedlings (10 cm shoot stage)3.202867.912578.428538.13248
NODDeveloping tillers at six leaf stage, 3rd internode9.3938610.97648.6498333.6312
CAR5Developing grain, bracts removed (5 DPA)19.267620.548117.946118.4303
CAR15Developing grain, bracts removed (15 DPA)10.2158.1983210.835821.9937



CDS Structure of MLOC_45739






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45739.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45739.1CUST_12501_PI427708083AvailableAvailablecontig_280637 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67100.1 +2 1e-62 221 121/174 (70%) 13101.m07275 protein expressed protein
TAIR PP10 AT1G65470.2 +2 2e-29 122 74/151 (49%) | Symbols: FAS1 | chromatin assembly factor-1 (FASCIATA1) (FAS1) | chr1:24319906-24323879 REVERSE LENGTH=807