MLOC_45590 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains40.040636.936237.5761.8749
LEAShoots from the seedlings (10 cm shoot stage)17.95512.75353.948389.15695
INF1Young developing inflorescences (5mm)115.966125.339112.358167.939
INF2Developing inflorescences (1-1.5 cm)109.875160.565139.878284.178
ROORoots from the seedlings (10 cm shoot stage)22.943135.279835.48673.8923
NODDeveloping tillers at six leaf stage, 3rd internode2.631613.848363.1340217.632
CAR5Developing grain, bracts removed (5 DPA)40.305333.516437.018965.3712
CAR15Developing grain, bracts removed (15 DPA)2.299381.73295.7345811.5881



CDS Structure of MLOC_45590






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45590.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45590.1CUST_12498_PI427708083AvailableAvailablecontig_279236 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05630.1 +3 3e-47 117 75/109 (69%) 13101.m00543 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT3G46030.1 +3 2e-43 104 71/105 (68%) | Symbols: HTB11 | Histone superfamily protein | chr3:16913614-16914051 REVERSE LENGTH=145