- Predicted Gene MLOC_45590
MLOC_45590 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 40.0406 | 36.9362 | 37.57 | 61.8749 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 17.9551 | 2.7535 | 3.94838 | 9.15695 |
INF1 | Young developing inflorescences (5mm) | 115.966 | 125.339 | 112.358 | 167.939 |
INF2 | Developing inflorescences (1-1.5 cm) | 109.875 | 160.565 | 139.878 | 284.178 |
ROO | Roots from the seedlings (10 cm shoot stage) | 22.9431 | 35.2798 | 35.486 | 73.8923 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.63161 | 3.84836 | 3.13402 | 17.632 |
CAR5 | Developing grain, bracts removed (5 DPA) | 40.3053 | 33.5164 | 37.0189 | 65.3712 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.29938 | 1.7329 | 5.73458 | 11.5881 |
CDS Structure of MLOC_45590
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_45590.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g05630.1 |
+3 |
3e-47 |
117 |
75/109 (69%) |
13101.m00543 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
TAIR PP10 |
AT3G46030.1 |
+3 |
2e-43 |
104 |
71/105 (68%) |
| Symbols: HTB11 | Histone superfamily protein | chr3:16913614-16914051 REVERSE LENGTH=145 |