MLOC_45512 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains62.440925.279430.990435.4291
LEAShoots from the seedlings (10 cm shoot stage)12.60651.894363.037355.61655
INF1Young developing inflorescences (5mm)56.979970.101773.701151.6832
INF2Developing inflorescences (1-1.5 cm)32.440844.280233.627442.0859
ROORoots from the seedlings (10 cm shoot stage)40.325321.385724.080426.8328
NODDeveloping tillers at six leaf stage, 3rd internode0.3218750.4120290.2732721.72157
CAR5Developing grain, bracts removed (5 DPA)16.55818.034920.05518.0567
CAR15Developing grain, bracts removed (15 DPA)1.072780.8762640.6970933.28701



CDS Structure of MLOC_45512






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45512.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45512.1CUST_12496_PI427708083AvailableAvailablecontig_278593 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49860.1 +3 9e-15 71 36/36 (100%) 13105.m05340 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT3G09480.1 +3 2e-14 68 34/36 (94%) Histone superfamily protein | chr3:2914890-2915270 REVERSE LENGTH=126