MLOC_45494 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3569670.7125240.1834410.441433
LEAShoots from the seedlings (10 cm shoot stage)2.6723100.6768821.31358
INF1Young developing inflorescences (5mm)2.41192.40584.412022.50294
INF2Developing inflorescences (1-1.5 cm)0.2218840.5932680.6873330.51093
ROORoots from the seedlings (10 cm shoot stage)0.2205770.3177250.2446760.277341
NODDeveloping tillers at six leaf stage, 3rd internode1.143031.411531.408192.78167
CAR5Developing grain, bracts removed (5 DPA)1.052971.290870.6295370.916353
CAR15Developing grain, bracts removed (15 DPA)0.7982070.5776520.6373141.6084



CDS Structure of MLOC_45494






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45494.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45494.1CUST_12494_PI427708083AvailableAvailablecontig_278481 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g37510.1 -2 4e-55 187 132/166 (80%) 13106.m03884 protein tetraspanin family protein, putative, expressed
TAIR PP10 AT2G19580.1 -2 2e-28 113 90/167 (54%) | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021 REVERSE LENGTH=270