MLOC_45380 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.271918.926416.267217.2414
LEAShoots from the seedlings (10 cm shoot stage)24.31125.010526.510222.6797
INF1Young developing inflorescences (5mm)17.420519.728826.831317.1323
INF2Developing inflorescences (1-1.5 cm)23.634521.756721.498724.3814
ROORoots from the seedlings (10 cm shoot stage)19.983621.034720.24827.5265
NODDeveloping tillers at six leaf stage, 3rd internode28.203526.251532.401495.0485
CAR5Developing grain, bracts removed (5 DPA)14.244913.669817.120714.547
CAR15Developing grain, bracts removed (15 DPA)12.678812.591711.850628.0811



CDS Structure of MLOC_45380






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45380.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45380.1CUST_6374_PI427708083AvailableAvailablecontig_277631 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08120.2 -1 2e-176 514 258/287 (90%) 13102.m00935 protein calmodulin binding protein, putative, expressed
TAIR PP10 AT2G18750.3 -1 7e-142 425 205/287 (71%) Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622