MLOC_4531 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains72.453360.542962.918163.381
LEAShoots from the seedlings (10 cm shoot stage)33.29674.641288.5311811.9996
INF1Young developing inflorescences (5mm)29.796116.119316.631818.5276
INF2Developing inflorescences (1-1.5 cm)13.219620.715318.757420.5122
ROORoots from the seedlings (10 cm shoot stage)21.659521.628323.377623.0947
NODDeveloping tillers at six leaf stage, 3rd internode2.035531.475150.03798092.36699
CAR5Developing grain, bracts removed (5 DPA)11.860613.43728.1415811.6217
CAR15Developing grain, bracts removed (15 DPA)0.489230.2341430.4241610.977058



CDS Structure of MLOC_4531






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4531.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4531.2CUST_12312_PI427708080AvailableAvailablecontig_135231 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17760.1 -2 5e-98 302 238/315 (76%) 13103.m02123 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT1G22910.2 -2 5e-33 126 66/84 (79%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:8105808-8107618 FORWARD LENGTH=242